SLiMAn - Pairings

Query

Project :
Creation date :
SLiMAn version :
Accessibility :
Mode :
Input Proteins :
Total SLiMIP hits :

Interactant filtering

	In	Out	None
ELM
PFam

Unique Interactions

	In	Out	Sum
ELM
PFam

All Interactions

	In	Out	Sum
ELM
PFam
Hits

Download Section

RawInput.txt Click to download

- InputFile.txt Click to download

SLiMIP_Connexions.tsv Click to download

SLiMIP_DATA.json Click to download

BioGrid_partners.csv Click to download

- BioGrid_partners.json Click to download

IntAct_partners.csv Click to download

- IntAct_partners.json Click to download

AlphaFold InputFiles :

ELM	Disorder	HSM	PSP+	PPI Db.	SLiMAn	Visual	Settings
e-value MOD DOC LIG DEG TRG CLV ELM instance	IUpred2A Strict Disorder Anchor ⋝ Short ⋝ Long ⋝ SDom ⋝ LDom ⋝ AlphaFold pLDDT ⋜	Proba. ⋝ Appli.Only BEST(s) : Pair Domain Motif	x x ⋂ o x ⋃ (x ⋂ o) x u u ⋃ x u ⋃ (x ⋂ o) u ⋃ o u ⋃ x ⋃ o ⋃ x Legend: u x o x	BioGRID Low BioGRID High BioGRID Total Or And IntAct HuRI IntAct + Huri PubMed count	Confidence ⋝ Selected SLiMAnDB templates Valided models	Ordering PFam search ELM search RenderTimer →Table← Go to SLiMIP ! →Cytoscape← Go to Cytoscape ! →PPI Matrix← Go to PPI matrix !

Nodes	Edges	Cytoscape legend	Actions
Layout All proteins Filtered domains Multi-domains Filtered Motifs	ELM BioGRID IntAct HuRI HSM

Data Pannel

Cytoscape.js is an open-source graph theory (a.k.a. network) library written in JS. You can use Cytoscape.js for graph analysis and visualisation.

Cytoscape.js allows you to easily display and manipulate rich, interactive graphs. Because Cytoscape.js allows the user to interact with the graph and the library allows the client to hook into user events, Cytoscape.js is easily integrated into your app, especially since Cytoscape.js supports both desktop browsers, like Chrome, and mobile browsers, like on the iPad. Cytoscape.js includes all the gestures you would expect out-of-the-box, including pinch-to-zoom, box selection, panning, et cetera.

Cytoscape.js is an open-source project, and anyone is free to contribute. For more information, refer to the GitHub README.

Acknowledgement

Cytoscape.js: a graph theory library for visualisation and analysis

Franz M, Lopes CT, Huck G, Dong Y, Sumer O, Bader GD,. Cytoscape.js. Bioinformatics (2016) 32 (2): 309-311

PDF - PubMed abstract

Query

Interactant filtering

Unique Interactions

All Interactions

Download Section

Filtering parameters

IUpred2A

AlphaFold

Cytoscape parameters

Data Pannel

Acknowledgement